What to know
This module gives an introduction to Nextstrain, a powerful tool to interact with genomic data displayed in phylogenetic trees.
Overview
Presenter: Michael Weigand, PhD | Bioinformatician, CDC
Download Presentation Slides [PDF - 20 slides]
Nextstrain is an open-source project providing analytical tools using publicly available pathogen genome data.
Further Reading
- Nextstrain: real-time tracking of pathogen evolution. Hadfield, et al. Bioinformatics, 2018.
Additional Resources
- Tutorials — Nextstrain documentation. Nextstrain, updated 2021.
- Nextstrain: analysis and visualization of pathogen sequence data. Nextstrain, updated 2021.
- Nextstrain SARS-CoV-2 resources. Nextstrain, updated 2021.